rs27454083 SNP Detail

Summary

• ID
  rs27454083
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120545938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC TTTGTATATT AGTAGGGTGT
  W
  GTGGCACATA GCTCTGGTAG TAGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37647021	NES09020615	PERLEGEN	MM_PANEL2	f	SNP	A		A	A		A	A	A		T	A	T		A
ss45366160	mCV25281086	ABI	CRAMUS_MOUSE	f	SNP	A	A	A		T		A
ss147367222	ENSMUSSNP5687660	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320479585	CHEV_2_120541193	CHEVERUD	SCREENING_POP	f	SNP									T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27454083					SNP	A	A	A	A	T	A	A	A	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37647021	NES09020615	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120545938 () rs orientation: forward

Symbol	Name	Function Class
Cdan1	codanin 1	697 bp downstream
Stard9	StAR related lipid transfer domain containing 9	within coordinates