rs27454879 SNP Detail

Summary

• ID
  rs27454879
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120953029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCAGGC ACTGTTCCAG
  CTCCTCAGGT AAGCATGTAA GGATACATCT GGTTAGAAAG GTGTATTTGG GGCAGTGTAA
  TGGGAACTGT GGTTTTGCAC GGTAAGCTTA GAATTCTGTC TTTGGGAATT CCCTTAGAGA
  ATATCTCAAA GGGGGAGACA GGGAGACTTT GAAGATTCTG AGATGCTAAG CACTGAGTAG
  K
  TTTTATGCCC AAGCAAACAG CTGCACAAAC CAGGTTGAAG GAAAGGACAA AGTTAGAACT
  TGGGAGAGAA AGATGGCCGA CGAGACTTAA GGCACATCTC AGATTCCATT TTAGGGTTTT
  GTGGTTTGTT TGTTTGTTTG TTTGTTTTTT CCGAATAGTA ATAGGAAATT CCTAAAGGTT
  TAAAAATCAT TTTTAAAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37646211	NES09024953	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27454879					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646211	NES09024953	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120953029 () rs orientation: forward

Symbol	Name	Function Class
D2Ertd616e	DNA segment, Chr 2, ERATO Doi 616, expressed	1039 bp distal