rs27455974 SNP Detail

Summary

• ID
  rs27455974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119356225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAATACT GGGCTGGGGA
  GTGGCTCAGT GAGTAAAGCA CATGCCAGTC ACTCATGAGG ATCTGAATCA GAGCTCCAGA
  GTCCACATAA AGCAAGACGT GGCAGCGCTA TAATCCCTGG ACTCCTAGAG CAGAGACAGG
  AGGCTCACAG GCCAGCCAGG CTGGTGCATG CAGTGAACAG CAGGAGACTG GTGAGAAGGA
  R
  AGAGCCAGCC TTACTCATGG CTGCTCCTGA CCTCCATGTG TGCACTTGGT GCCTCTGTGC
  CTGCACCTGC ACCCCACATG GCACAGGCTA AATAATGACT CCAGTGTATC TGTGTCTATG
  CTGGGCATGG TAGAGCTTGC AGTGATCCTA GTATTTGGAA GGTGTAGGCA GGAGGATCAG
  GGCTTCAAAG TCATCCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650122	NES09017478	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27455974					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650122	NES09017478	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119356225 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr64	DNA Segment, Chr 2, Derry C. Roopenian 64	710 bp distal
D2Mit395	DNA segment, Chr 2, Massachusetts Institute of Technology 395	707 bp distal
Exd1	exonuclease 3'-5' domain containing 1	Intron
Rr563524	regulatory region 563524	within coordinates