rs27455978 SNP Detail

Summary

• ID
  rs27455978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119355179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCTATC CAACAGACTA
  ACAGTTCTGT GCAGAACACA CCTGAAATGT AGTGACACAC CTTTCAATAC TTACCTGAAT
  ACGTTTCTGT CTCTCTTCTA AAAAGAAAAG GTATCTGGGA GCAACTTTAA GGTGTCTGAT
  TAAACTCTCC TGCAAAGTAC TGATACAGTT TGGAAGAAAG CCACCCGTTT CCATAGAAAA
  Y
  TGAAGGACGT CGGCTACCTG AGGTATGAAA CAGAAAACAA TCACACAACA ACAAAAGAGG
  ATTAGGTAAT ATACACAGAT AAGGATCTCA CATCAGAGGT ATTAGTATGC CCCAGGCCCT
  GGGCTCCACC CTGGCCAAAG CTAGGTTTTC TGGTACAAGC CTGTAGGCAG AGGCAAGACG
  ACCATGGATC ATTATCTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650126	NES09017516	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27455978					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650126	NES09017516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119355179 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr64	DNA Segment, Chr 2, Derry C. Roopenian 64	215 bp proximal
D2Mit395	DNA segment, Chr 2, Massachusetts Institute of Technology 395	215 bp proximal
Exd1	exonuclease 3'-5' domain containing 1	Coding-Synonymous
Rr563524	regulatory region 563524	713 bp proximal