rs27455981 SNP Detail

Summary

• ID
  rs27455981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119354744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGTGCCAT AAACCCCCAC AAAGTTGGAG GGAGGGCTAG
  GGCAATAGCT CAGCCATAGA GCACTTGCTT GCCATAGCAA CACTTCACAG CAGCACTGAA
  R
  GAAAAATGCT GGAGCAAACT GAAATACAGT CACAACCCAG GTCTGCATGT AAGGATATCA
  CACTCTGAGG GAGATTGATA TTGCTTTGGG AAAAGCAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650129	NES09017513	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		G	A	G	A		G	A	A	G		A
ss45372968	mCV23191621	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss147334671	ENSMUSSNP5189505	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320475889	CHEV_2_119349999	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27455981					SNP	G	A	G	A	G	A	G	G	A	G	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650129	NES09017513	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119354744 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr64	DNA Segment, Chr 2, Derry C. Roopenian 64	650 bp proximal
D2Mit395	DNA segment, Chr 2, Massachusetts Institute of Technology 395	650 bp proximal
Exd1	exonuclease 3'-5' domain containing 1	Intron
Rr563524	regulatory region 563524	1148 bp proximal