rs27455982 SNP Detail

Summary

• ID
  rs27455982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119354031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGCATG TAGTCTATTG
  GCAGAGAGTG CTGACAATGT GTGAGTCTTG TGCTTGGGCT CTAGAACTGC AAACACACAA
  CCACACAGGC GAGCTCCCGG AAACGGTGAG TATCTCCGTG TTCAAGGTGA GGAAGAGGCA
  GCGAATGCAC CCACAGGAGA AAGCAGCACC CACCTCTGTG CCTGCAAGCC GGTCTGCAGA
  R
  CCCTCCCGGT AGGTGTTCAG GTACCCATCC ACCAGTGTGG TTAAGTCTGA CATCACCTCA
  TCCAGGAGCA CCAATCGAAG TGGAAGCAGG TAGGTTGTTT CCAGGGCCAA GATTTTCAAT
  AAAGAGGGTG GAAGAGGTCT TGTCAACCAT ATTTCTGGAT TTTCCTAGAG ACAGCAAAAC
  AATTTTTAAT TAATACTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650130	NES09017537	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27455982					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650130	NES09017537	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119354031 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr64	DNA Segment, Chr 2, Derry C. Roopenian 64	1363 bp proximal
D2Mit395	DNA segment, Chr 2, Massachusetts Institute of Technology 395	1363 bp proximal
Exd1	exonuclease 3'-5' domain containing 1	Coding-Synonymous
Rr563524	regulatory region 563524	1861 bp proximal