rs27458055 SNP Detail

Summary

• ID
  rs27458055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118597303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGT CCGGTTAGGA AAGTAACAGC
  Y
  AGACTGGGGA GGTCACTAGA GGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652160	NES09027414	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C		T	T	T	C		C	C	T	C		C
ss45228921	mCV22541649	ABI	CRAMUS_MOUSE	f	SNP	C	T				C		T
ss147312109	ENSMUSSNP1553858	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
ss320471673	CHEV_2_118592558	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27458055					SNP	C	T	T	C	C	C	T	T	T	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652160	NES09027414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118597303 () rs orientation: forward

Symbol	Name	Function Class
Rr397216	regulatory region 397216	1913 bp downstream
Rr563327	regulatory region 563327	1886 bp distal
Rr563329	regulatory region 563329	1156 bp distal
Rr563330	regulatory region 563330	within coordinates
Rr563331	regulatory region 563331	9 bp proximal