rs27458057 SNP Detail

Summary

• ID
  rs27458057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118593230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCCCGG GAGCCAGAGC
  TGGAGGGAAG CTGGAGCCAC CAGAGCCGGC CCTGTCGGCC TCTCCCTGCC GGCTTCTGCT
  TCGCTGCTCA GCACAAGAGA TCATGTTGTG ATTACAAAAG AGCGCTCTGG GCTCCCAGCC
  AGGAACGCCT AGCCGCCACC CCCACCCTTC CACTCGCAGA GGGCGAGGAC CGGGGCACCA
  R
  CAGCCGGCTG GTCTTGTCTA GCACATATCC CTGCCCTGCC TCAGTGTCCT CGCACAGGAG
  ATCTAGGCAC GAAGGGCCCA CTTTCACCTG TGATCCTGAG CCCCAGTAAG ACCCGCCCGC
  CTGTGTGTGC CCACAAATGG GATAGCTGGG TCTTCATCCC TCCCACTAGG AGAAAAAGGC
  AAGAGATGCA GGTTCCACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37652170	NES09027481	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27458057					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652170	NES09027481	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118593230 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc9b	coiled-coil domain containing 9B			mRNA-UTR
				Noncoding-Transcript-Variant
Rr367276	regulatory region 367276			within coordinates
Rr397216	regulatory region 397216			1859 bp upstream
Rr563323	regulatory region 563323			1365 bp distal
Rr563324	regulatory region 563324			1243 bp distal
Rr563325	regulatory region 563325			354 bp distal
Rr563326	regulatory region 563326			within coordinates
Rr563327	regulatory region 563327			1441 bp proximal
Rr563328	regulatory region 563328			1926 bp proximal
Tssr25793	transcription start site region 25793			83 bp upstream