rs27460922 SNP Detail

Summary

• ID
  rs27460922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118093454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGTTAG ATTTTGTTTT
  TGTTTCCTGT CTCTCCTGCT CTTGACACCC GCCTTCTGAG TGGAGTCAGA TTTGAAGGAC
  TGAGAAAAAG CCCACATTGC ATTCCATCTG GGCTCCAACT GCCAGATGCA GTGCCCCGGC
  TTCCCTCTTC GCACCATAAG CTCATGCCAA CTGTAACGTT GAGATGGGAG AGCATAGTTA
  Y
  CACAGACCAA GCTCAAAAGC CTTTTCTTCC TAAGGGTTGT TAATAGTGTG CGCCACGATG
  GGGCCCCAGC TCCCCGGATT CTGTGCCTTA CATCACTGGA AAAAAAAAAT GACATTTACA
  GGATGCTCAA GACATGGCTC GGATTCTTCA TTTCCCATTT ATTTCCCCAC ACCCCCCTGG
  TTGGCATAAT GATTGTGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37653646	NES09024454	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27460922					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653646	NES09024454	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118093454 () rs orientation: forward

Symbol	Name	Function Class
Gm29232	predicted gene 29232	within coordinates
Gm75384	predicted gene, 75384	631 bp upstream
Rr397203	regulatory region 397203	295 bp upstream
Rr563206	regulatory region 563206	141 bp proximal
Rr563207	regulatory region 563207	344 bp proximal
Rr563208	regulatory region 563208	669 bp proximal
Rr563209	regulatory region 563209	855 bp proximal