rs27460925 SNP Detail

Summary

• ID
  rs27460925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118091980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGATCTGG CCAGTTGACA
  ATGATGCTCC AAGCCAACCA TTGGACTGAG CGTGGGGTCC CTGATGGAGG AGTCAAGGAA
  GAGACTGAAG GAACTGAGGG GGTTTTCAGC CCCATGGATT GGAGTTCTTA ACTCCATTGT
  ATAGTAAAAC CACCATTGCA TAAACTCTGA CATCAGGGCT GTACCTGAGA GCAAAGATAT
  Y
  AGAAATTTCA CACCACCTTC TCCACCTTTA ACTGTAAATA CATCACCCAA TGAATGATTT
  TGATAAAATG CTGATTTGGT CTTTGAAGGG ACCCTCACAG GTGATGGATG TCAGGGCTCC
  TAGAACCTCC AACTGTTTTT TGTTTGTTTG CTTGGTTTTT TTTTTTTTTT TTTTTTTGAG
  GAGTTACAGG TAAATCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37653649	NES09024480	PERLEGEN	MM_PANEL2	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27460925					SNP	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653649	NES09024480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118091980 () rs orientation: forward

Symbol	Name	Function Class
Gm29232	predicted gene 29232	within coordinates
Rr397203	regulatory region 397203	1769 bp upstream
Rr563205	regulatory region 563205	1466 bp distal
Rr563206	regulatory region 563206	1615 bp proximal
Rr563207	regulatory region 563207	1818 bp proximal