rs27461273 SNP Detail

Summary

• ID
  rs27461273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128126778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCCTCCT TCCCTCATCA CCGCCCTTCC CCCCCTTTCA
  TGTGTCTTTA TAAGTTTACT TCGTATTCAG GATTTTTGAA CACGACAGGC TTGTTTTGAG
  Y
  GAGCAGCAAA CACAAGTCCA GCTGTGAGAG GGAAGGGCAA TATGGCCCCC TCAGCCAGAG
  CCCCAGGAAA AGCTACAATG ACACAGCCCA TCAGAGGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626300	NES09016764	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T		C	T	C	C	T	C	C	T	C
ss45331652	mCV22523724	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss147556423	ENSMUSSNP2219262	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27461273					SNP	C	C	C	C	C	T	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626300	NES09016764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128126778 () rs orientation: forward

Symbol	Name	Function Class
Rr564691	regulatory region 564691	within coordinates
Rr564692	regulatory region 564692	690 bp proximal