rs27465813 SNP Detail

Summary

• ID
  rs27465813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:113371076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAGGTC TCATTCAGAC
  TGACTTACAA TTCATACCGA AACTCTTTTT CTGAACCTCT GAAATTCTGG AATTGGAGCC
  GTGAAGCACT GTGCCTGGCA AGTCAAGAAA CTTTGTTTTG AAGCTGTTTT AGAAATTGTA
  ATGGAGAACA TTGCAAATGT CCACAAAGGA TAAGAACTTC TCCATGTGGT GCACGCCCTT
  Y
  AGTAAAAATA AGATCGTGGT AGAAATCATT CATTCATCCA CTCATTCAAC AGCCAAACAT
  TTCATACATG TAAAACAGAA ATGCTTTTGT TTTTAAAACT GTAGTCATCA GTACTAGTCG
  TGGACTAAGA AACTAAGTAT AATAGAATTT GAAGAATAGT TACCACACAA AAAAATAAAT
  TATTGGGTGT GAAAATTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37668432	NES09045143	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27465813					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37668432	NES09045143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113371076 () rs orientation: forward

Symbol	Name	Function Class
Fmn1	formin 1	Intron
Gm13964	predicted gene 13964	within coordinates
Rr562774	regulatory region 562774	1281 bp distal