rs27465823 SNP Detail

Summary

• ID
  rs27465823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:113369333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTCCGAG TCCATTCACG
  GTCTGGTTAT CGAATTGTTC TCTACCCTCA TAGACTCTGT CAACTTTCTC AGTTTAGGAC
  AAGCCTGGAA CATTGCTTTT CATGTGCCTA TTGCATTCTC ACCAATCCTG AAAACTGCTG
  GAGCATCCTC CTCGGGCGTG GTTCTCTCTT CCCTGTCCAC CTCAGGAACA TCCTTGTGAC
  Y
  TGCAACTCTG GGATAAAGCA CATTAATTAA CAAAGAGAGA CGCATTTAAA ACAGGGCCAA
  AGAAAAGCCA CAGTGCTTAA GCTGGGGCTT ATTATAAATA GATCACTCTG TACTCTAATC
  ATCTTGCTAA TGGAAAAGCT GAGACTCTGA GATGATTGCT CAGGGAAGAA TGCGATTCAG
  TGTGCAGCAG CGAGATGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37668442	NES09045245	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27465823					SNP	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37668442	NES09045245	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113369333 () rs orientation: forward

Symbol	Name	Function Class
Fmn1	formin 1	Intron
Gm13964	predicted gene 13964	within coordinates
Rr562773	regulatory region 562773	293 bp distal
Rr562774	regulatory region 562774	98 bp proximal