rs27465837 SNP Detail

Summary

• ID
  rs27465837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:113367542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCCTAGG CAAGAATGAG
  GTCCTGGACA AGGCCTTTGA AGTCTCCTTA TGGCAGGCGT CTCATTCTGT CAATAGATGA
  GCTTCAGTTT GAAGGGTTCC GAGGCTCAGG TGGTGATTCT GAAGACTAGA ACACTAAACA
  TCCAGCAGCC TTAATTTAAC TTTCTGTGTA ATGGGGCAAC TGGGCAAGGG AATCCCATCC
  R
  GACCAATATC TCAGTACTCC TAGAGTGTTC TGCAGACTCA GCTGCCTTAC AGCGTCTGCT
  GTGTCGTATG AGGCCTGGAT ACTCATCCGG CCTCAGAGAG TAACTGTGAT TTTAATAACC
  CCTATTTAGC TTTGATGGAA TAATTTTAAA ATGAAGTTCT TTTAAGTACT GGCAATCTTT
  GGAAAATCAC AATGCAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37668456	NES09045231	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27465837					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37668456	NES09045231	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113367542 () rs orientation: forward

Symbol	Name	Function Class
Fmn1	formin 1	Intron
Gm13964	predicted gene 13964	within coordinates
Rr562771	regulatory region 562771	1166 bp distal
Rr562772	regulatory region 562772	1358 bp distal
Rr562773	regulatory region 562773	550 bp proximal
Rr562774	regulatory region 562774	1889 bp proximal