rs27465996 SNP Detail

Summary

• ID
  rs27465996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:113327469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAATCT GTGAAATACA
  AAATAGTTGA AAACTGCTTA CTCAAGTCAA ATTAATATTC CTTGGCCTAG TGAATAAGCT
  ATATGGATCA TTAGTTTTTC TGACAGTTTT CTCCCTTAAA ACATAATTAT GGCTAACTTT
  TGATTGTATT AGTCCTTATA TTGCAGGCCT TTCTAAAGTC CTTTGTAGTC CTGCTTGCTC
  R
  AAAATTGTGA TGGTAGTTTT GCTCCTTTTC CTCCCTTTCC TCCTCTTCCT CTTCCTCTTC
  CTCCTCCCCT TCCTCCTCCT CCCTCTCTTC CTTCCTTCTC CCATTCCTTC TGCTCCTCCC
  TCTTATTGTG CAGTGCATCA GATCTACTTC AGAAAGTCTT TAGAGTAAAA CTTTATTTTT
  CCAGTTGCAG AAATGTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37668615	NES09045911	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27465996					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37668615	NES09045911	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113327469 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fmn1	formin 1			Intron
				Noncoding-Transcript-Variant
Rr288	regulatory region 288			484 bp proximal
Rr562768	regulatory region 562768			676 bp proximal
Rr562769	regulatory region 562769			1783 bp proximal