rs27465997 SNP Detail

Summary

• ID
  rs27465997
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:113327379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCA TTAGTTTTTC TGACAGTTTT
  S
  TCCCTTAAAA CATAATTATG GCTAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37668616	NES09045910	PERLEGEN	MM_PANEL2	f	SNP	C			G		G	G	G		G		G
ss45241419	mCV23804325	ABI	CRAMUS_MOUSE	f	SNP		C	G		C	G
ss147239915	ENSMUSSNP3825061	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G			G
ss320461229	CHEV_2_113337191	CHEVERUD	SCREENING_POP	f	SNP									C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27465997					SNP	C	C	G	G	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37668616	NES09045910	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113327379 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fmn1	formin 1			Intron
				Noncoding-Transcript-Variant
Rr288	regulatory region 288			574 bp proximal
Rr562766	regulatory region 562766			1983 bp distal
Rr562768	regulatory region 562768			766 bp proximal
Rr562769	regulatory region 562769			1873 bp proximal