rs27465999 SNP Detail

Summary

• ID
  rs27465999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:113327178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGAGGAA GTTCAAGGGT
  TGAATTGCTA ACATTTGACC TGTCCTGACG CATAGAGCAG CCAGTTTTAG ATGACCTAAC
  TGGATATGTT CACCTTAGAG GACAAGGACA CGGTGGTGGG GGCAGGGAGG CTTCTCTTCT
  GGAGGGACCA TCCTCTGAGA TGCTCTCTGA GAGAGTGCAT CTGAGACTGT CACAAAGCAT
  Y
  GCCTAGAGAC TGAAGCGCAG ACTGTATGTC ACTCTTCATA GAACTCTTGA GACATCTCAT
  GACTCCAGTG GGGAAAGTGG TCAAGCTTTC AGGAAAATCT GTGAAATACA AAATAGTTGA
  AAACTGCTTA CTCAAGTCAA ATTAATATTC CTTGGCCTAG TGAATAAGCT ATATGGATCA
  TTAGTTTTTC TGACAGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37668618	NES09045908	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27465999					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37668618	NES09045908	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113327178 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fmn1	formin 1			Intron
				Noncoding-Transcript-Variant
Rr288	regulatory region 288			775 bp proximal
Rr562766	regulatory region 562766			1782 bp distal
Rr562767	regulatory region 562767			1927 bp distal
Rr562768	regulatory region 562768			967 bp proximal