rs27466004 SNP Detail

Summary

• ID
  rs27466004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:113326630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACT GCTTGAAATA AATATTTACA
  R
  CTTGATGCTG CATGTGGTAT CTAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37668623	NES09045903	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A		G	G		A	G	A
ss45311652	mCV23804322	ABI	CRAMUS_MOUSE	f	SNP	A	A	G			A	G
ss147239906	ENSMUSSNP1784870	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
ss320461226	CHEV_2_113336442	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27466004					SNP	A	A	G	G	A	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37668623	NES09045903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113326630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fmn1	formin 1			Intron
				Noncoding-Transcript-Variant
Rr288	regulatory region 288			1323 bp proximal
Rr562766	regulatory region 562766			1234 bp distal
Rr562767	regulatory region 562767			1379 bp distal
Rr562768	regulatory region 562768			1515 bp proximal