rs27467328 SNP Detail

Summary

• ID
  rs27467328
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126561612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAGACA AGCTAAGATA
  CCTGTGTAGG AATGAAGATG GAAGAAAATA ATGCATCAGT GGTGGCATTT GAGCAGTGGA
  ACTTCACTCA GGTGAGAGAG GGTCCACCAC ATACCACTGT CCCTTATTGT CACCCGTAGC
  ACAATGGCTT TTCAAAATGC CCGTTAGGAG AAAATAGAGA AAGATTGGCT TCTTCCTGAG
  M
  TAAGTTGGTA ACATGGGGTA GCACGGAGAG TAATTTTGTT TAATTCTTGT TGTTTGATTT
  TTTTTTTTAA TCAATAAAGC CATCTTTGAA CTTTCTCAAA TACTAAAGAC AGAAACTTTA
  TAAATGTTAG CTCAAAGATG GTCATTTCTT TCTATCAGGG TCTGATGTAT CTCTTAAGAC
  TAGCCTAACC CCAGAGGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37631373	NES08999843	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27467328					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37631373	NES08999843	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126561612 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tssr19969	transcription start site region 19969			1634 bp downstream
Usp8	ubiquitin specific peptidase 8			Intron
				Noncoding-Transcript-Variant