rs27467612 SNP Detail

Summary

• ID
  rs27467612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125432947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTACTTT GAGAATAGTT
  ACTCCATAGG ATTACCACAT ACTCTGCTCT GTGCCCCTTT GTACCAGCAC TGCCTCATTC
  TGTACCTAAT TCAGTAGATA CCGTTTTAAG GTACATGATG TACGCTGGCC CACTGCTTTC
  CAGGCAAGTC ATGAACACGA GCATCCTGCC AGGGGGTGCA GGAACAGCCT CCATCCTCTC
  R
  ACTGACCGCT AACATCAGCA ATTATTCTCA GGGACTGAGC TGGATGGGAA AGGGGAAGCT
  AACAGTTCTT TCGACTGAAT TCTGTGCTGG CCCCAGAGTG GCACCTCTTT GTTTACAAGA
  CTGTGTGTGT TCCCTTCCAT TCGAATGCTC CCATATCTAT AAGTTCCTTA CTCTCTGTAT
  GGGAATTAAT ACATCTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss37634346	NES09001693	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs27467612					SNP	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37634346	NES09001693	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125432947 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cep152	centrosomal protein 152			Intron
				Noncoding-Transcript-Variant
Gm75597	predicted gene, 75597			550 bp upstream
Rr564236	regulatory region 564236			1508 bp proximal
Tssr19898	transcription start site region 19898			614 bp upstream