rs27474244 SNP Detail

Summary

• ID
  rs27474244
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109525378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCTGTG AGTTTGAGTT
  TGAACTGGTG TTTTAGTGAA AACAATTCGT GAGTTGGGGG TGGAGCCTGG GCTAGGAAAC
  TGGGGATGGG GACTTGGGGA TGGGGGGAGC CGGAGGGAGA GAGGGAGGAT CCAAGGAGGA
  GGGAGGGGAG GGCCAGGAGA GCTGAGCTAG GAAGGTAGAG GGTGCCCTCT TCTGGCCACA
  M
  TGGCAAGAGT AGCTGCTGGG GCTCGTCGAA TGGGGGCGGG GAAGTGTTTT AGGGGCAGTT
  TTGCTGGTCG TTATGGGGGT TGCGAGTAGA AACTTGTTGA GTGGCGTTTT GAAACAGCTT
  CCTGAAGATG TGCGGCTCGG TTCGGAATTT TGGCTTGTTG CATTTCTTTC CTTGAGTTGC
  CGGGGTGCTT TGAGATACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677466	NES09051979	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474244					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677466	NES09051979	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109525378 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	within coordinates
Cpgi12036	CpG island 12036	624 bp distal
Rr55360	regulatory region 55360	within coordinates
Tssr19302	transcription start site region 19302	1409 bp downstream