rs27474245 SNP Detail

Summary

• ID
  rs27474245
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109524934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTATCACA ACAGGCTGTT
  CACTGTCACC TGCTCTCTAG GGAGTACTAC CAAAGCTTAC TTACAGGTCC AAGGTCAACG
  TTTAACTAGG AAAACTTGGG ACCCTTCTTA TCGCTGGGGC CTGAAAGGGT CTGCGGAACT
  CCAGGACAGC CTGTATCCGA CCCTCTGTCC ATCCTGCGCA CCTCCCTTTG GGCATCCTCC
  W
  GAGGAAGTGA AAGTTTTGAC TTTCATCCGG GAGTAGGTTG GGTGTTTATG GAGGATGAAG
  AGGCTAGTTT TGATTTCCAG GGATGCTGAA ACAGGAAGAG CAATGGATAA GCGACCTAAG
  CGTAGAAAGA AATAGCTGAA GATGGGGGCT TTGTGCTTGA TGACAAGGAA GAAGGGGAAA
  TTGCTGCCGG GGGTGGGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677467	NES09051978	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	T	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474245					SNP	A	T	T	T	T	T	T	T	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677467	NES09051978	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109524934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bdnf	brain derived neurotrophic factor			Intron
				mRNA-UTR
Cpgi12036	CpG island 12036			180 bp distal
Rr562485	regulatory region 562485			1552 bp distal
Rr562486	regulatory region 562486			1016 bp distal
Rr562487	regulatory region 562487			110 bp distal
Rr562488	regulatory region 562488			within coordinates
Rr562489	regulatory region 562489			411 bp proximal
Tssr19302	transcription start site region 19302			965 bp downstream