rs27474248 SNP Detail

Summary

• ID
  rs27474248
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109523718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG AGCTTTGGGT TTAAGCAGCG
  R
  GCTCCGGGGA AATGGAGAGA AGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677470	NES09051975	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A		G	A	A	G	G	G	G	G	A
ss45317933	mCV23782144	ABI	CRAMUS_MOUSE	f	SNP	G	A				A		A
ss147203325	ENSMUSSNP5825390	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474248					SNP	G	A	A	A	A	A	G	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677470	NES09051975	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109523718 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	within coordinates
Cpgi12035	CpG island 12035	791 bp distal
Cpgi12036	CpG island 12036	within coordinates
Tssr19301	transcription start site region 19301	829 bp downstream
Tssr19302	transcription start site region 19302	228 bp upstream