rs27474249 SNP Detail

Summary

• ID
  rs27474249
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109523534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCTGGT TAAGCCGATG
  TGTTTAAGGT AGCGGAGTAA ACCATAACCC CGCACACTCT GTGTAGTTTC ATTGTGTGTT
  CGCTTTTTCT AGCTTTGTGG TGCGGGAAGG TGCGGGAAGG TGTGTCTGGG GCCGGGGCCT
  GGGGGTGGGG GTGGATGCAC GCCCTCTCCC ACAGAACTTG GGTGCTGGGA TGGAAAAGAT
  S
  GGGAGAGTTG CAAACCAGGG GAGAAAGATT TGAACGTGTG AGACTCACAC TCGCTTCCTC
  CTACTCTAGA GCACATTGCG GGGAGTAGGG TGCCTAGGAA CCGGGATTCG ACCACCCCTC
  CTAGCAAAGG GCACCCTGCG GAGACCGCAG AGGGCAGGCA CAGAGCTTTG GGTTTAAGCA
  GCGAGCTCCG GGGAAATGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677471	NES09051974	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474249					SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677471	NES09051974	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109523534 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	within coordinates
Cpgi12035	CpG island 12035	607 bp distal
Cpgi12036	CpG island 12036	45 bp proximal
Rr37268	regulatory region 37268	1334 bp distal
Rr55360	regulatory region 55360	within coordinates
Tssr19301	transcription start site region 19301	645 bp downstream
Tssr19302	transcription start site region 19302	412 bp upstream