rs27474251 SNP Detail

Summary

• ID
  rs27474251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109522345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGTGAT TATGTTAACA
  AGAGGCTGTG GCACCGTGCT CAATACTGCC CTCTTGTTCT TTTATATTTT TTTCTAAAAA
  AAAATAAAAT AAAATGAATA ATAAAGGTCT GTCTGCCCTA GCCTTTACTT ATTGGCTGGA
  TTAGAGGGGC AACGTTTAAC AAAGCAGCAA TCCAGGTAGA CACTTGGCAG AGTTTATCAT
  R
  CAGCTAAATG AAAGTAGCCC TCCAGAACCT AGTCATGTAA CTGATCTCTC ATAGGTTAAA
  AAAAAAATCA AACAACCAAA CAAAAACGGT CCAAAGACCA CTCTCTGCTC TAGAGGAAGG
  GGGCTTAGTG AGCTACCCAC CCCTCACCCT AAATCCTGGT TAAGTATATA TACATATATA
  TATTGATGTG TTGTTGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677473	NES09051972	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474251					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677473	NES09051972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109522345 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	Intron
Rr562483	regulatory region 562483	1484 bp distal
Rr562484	regulatory region 562484	within coordinates
Rr562485	regulatory region 562485	537 bp proximal
Rr562486	regulatory region 562486	1073 bp proximal
Rr562487	regulatory region 562487	1919 bp proximal
Tssr19301	transcription start site region 19301	524 bp upstream
Tssr19302	transcription start site region 19302	1601 bp upstream