rs27474252 SNP Detail

Summary

• ID
  rs27474252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109522041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCC AATTTTTCAC GGTGACTTGA
  R
  ATCGTCTGTG AATGAATTGC TTATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37677474	NES09051971	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27474252					SNP	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37677474	NES09051971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109522041 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	within coordinates
Cpgi12035	CpG island 12035	627 bp proximal
Cpgi12036	CpG island 12036	1538 bp proximal
Rr37267	regulatory region 37267	1041 bp distal
Rr37268	regulatory region 37268	within coordinates
Rr55360	regulatory region 55360	359 bp proximal
Tssr19301	transcription start site region 19301	828 bp upstream
Tssr19302	transcription start site region 19302	1905 bp upstream