rs27484639 SNP Detail

Summary

• ID
  rs27484639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110255653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAACCCG GGATATGATT
  TGGAACTGGG GAGAGAGGAA GCAAGTTTAT GTGGAAGATA TATTACCTCC ATTTGGGCTC
  CATAGAAGTG GAGTTTTTAC AGAATATTTG TGTTTGAGAG AACTCTAAAG TCCTAAGAGT
  CACTAAGGAG TCACACACAA AGTATACAAA TCTTGTCCTT AAGAAGGCAA GAGACTTGAA
  R
  GGTCACCCAA CCAAAGGAGT CGGGAGTGCA TACGTGTATT TGGGGTCTTG AAGGTCATTC
  AGAATTACGA AGGGTTACAT GTCCTATCTC TGTGAGTATA AGATAGCCTT TAAGTAGCAG
  GGATTCTGAT AAGAATGGAA ACTCAGGATT CTGTTTCTTA AGGGTATCCT TATGGGTCTG
  GTTGGACTTA GAGAATTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37708661	NES09222305	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss321256583	CHEV_4_110071061	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27484639					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708661	NES09222305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110255653 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Cpgi14588	CpG island 14588	453 bp distal
Rr597431	regulatory region 597431	655 bp distal
Rr597432	regulatory region 597432	78 bp distal
Tssr38370	transcription start site region 38370	748 bp downstream
Tssr38371	transcription start site region 38371	693 bp downstream
Tssr38372	transcription start site region 38372	648 bp downstream