rs27484640 SNP Detail

Summary

• ID
  rs27484640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110255245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTGACT GACGGACAAC
  AAAAATGGCG GAGCGGAGCC AGACAGCGCC AGAGGCAGGT CTGTGAGGGC TGTGGAGCAG
  GGGAAGGTTG AGGTGCCAGT CTTGGGCCTG AGGGGACTGG GGACTCTTCA TTGCCCTATC
  CCTGAGGAGG CGCCCTTGTA GGATACTGCG GTGGTTACTT CAGGGTCAGG GTTCACTGGA
  R
  GTCTGTATCT CTCTGAGTGA CCAGCAGGGA ATTTCAAAGT TCTGCTGATG GAGGGCTTAC
  ACTCTTGAGT AAGCATGGGC CCAGAAAGGG TTTGGAAAGA TGATATTGGA CCCATAATAA
  CGAGAGGCAC CTATTATGGG GACTGAGTCA AAATCCTGGA AAAGGAATGT GTTCAAACTC
  TTGTGGTACC TTGGAAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37708662	NES09222304	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss321256582	CHEV_4_110070653	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27484640					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708662	NES09222304	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110255245 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	within coordinates
Cpgi14588	CpG island 14588	45 bp distal
Rr597431	regulatory region 597431	247 bp distal
Rr597432	regulatory region 597432	within coordinates
Tssr38370	transcription start site region 38370	340 bp downstream
Tssr38371	transcription start site region 38371	285 bp downstream
Tssr38372	transcription start site region 38372	240 bp downstream