rs27484642 SNP Detail

Summary

• ID
  rs27484642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110254657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGCCAT TCTGATGGAA
  ATTAACAGAC TAATGTCCCA GTTGCAGAGG AGCCAGGAGC CAGGGTCTTT AGGACATCTG
  TTTGCTTTAG TTTTGCTAAT TATTCAATTA GTTCTCAATA TTTGTAAGTT GAATACAGGT
  CACTCAGCAT CTTCATGAAA GCAAGGACAT TAAGGGAAGA AGCTTTGGGA AATTAAGAAA
  Y
  TTATCCCAAG TACTTAGAAT AATCGCCAGC CTTAGAAATG CCAACCCACC CAGACATTTT
  GATTGGCACC TGGAGAGTGG GGCCAATAAA GTGTCATCCT TGCAGACTTA GTTTTGACAA
  GACAGAAGCG GCTAAGCAAG CTCAATCCCC AGGTTACTGT GGCTTGGGTG CAGAGTGCAC
  TTCAGAGCTT GAAGGCGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37708664	NES09222302	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27484642					SNP	C	C	C	T	C	T	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708664	NES09222302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110254657 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	201 bp upstream
Cpgi14588	CpG island 14588	92 bp proximal
Rr597431	regulatory region 597431	within coordinates
Rr597432	regulatory region 597432	342 bp proximal
Tssr38370	transcription start site region 38370	228 bp upstream
Tssr38371	transcription start site region 38371	250 bp upstream
Tssr38372	transcription start site region 38372	304 bp upstream