rs27484645 SNP Detail

Summary

• ID
  rs27484645
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110253517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGGTGC TCTTCTAAGC
  CACTTTCCAT GCTGTGCTAT TTCATACAAT AAATGTATGA AGTCGCTGGG AACTTCACTA
  AGAAAGAAGT ACTCTACGTT TCCTCCCGAA ATACTTCCCA AAGACTATAT GGCACACAGA
  AGAACTGAAT CTGGCAGTTA GCTAATTTTA TAGGCATTTC ATGTCCCTGC CCACCCGACA
  W
  TTTTCTATCA ACCCTTGTCT AACAGAACCT TTCGTAGAGA TGAAAGTACT CTGCACATAT
  GCTGTCTGCT ATGGTAGCCA CTAGCTACAA GAAATGAGCT AATGAGCACT TGAAACGTGG
  CCAGCACAAC TAAATTACTA GGTTCTAAAT AATATTTAAA GTAAAATCTG AACAGAGCAT
  CTCTGTCCTG TGCTTCATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37708667	NES09222390	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T	A	A	A		T		A	A	T		A
ss147200785	ENSMUSSNP508985	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A											T
ss321256581	CHEV_4_110068925	CHEVERUD	SCREENING_POP	f	SNP												A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27484645					SNP	A	A	A	A	A	A	A	T	A	A	A	A	T	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708667	NES09222390	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110253517 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	1341 bp upstream
Cpgi14588	CpG island 14588	1232 bp proximal
Rr597431	regulatory region 597431	888 bp proximal
Rr597432	regulatory region 597432	1482 bp proximal
Tssr38370	transcription start site region 38370	1368 bp upstream
Tssr38371	transcription start site region 38371	1390 bp upstream
Tssr38372	transcription start site region 38372	1444 bp upstream