rs27484646 SNP Detail

Summary

• ID
  rs27484646
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110253275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATTTCCC TCATTCCATA
  CTACATATAA CTCAGTGGCT AAGCACATGG AAGGTGTCAT TTTAATAAGT GTTTACCGAG
  AGTGGGTGAA TTCTATGTGG AATGTTTATT TGAAAAGAGG CACCCTAACT ATGCAGTGGG
  AGGTTGCTGT CTGGATATAG AAACCACAGG AGGCCCCTAA AAAGATAGAC TACCAGGGAC
  M
  CTCTGAATGA TACCATGGGG AAACTCATTT CTAGGACCCT CAGTGGGGTG CTCTTCTAAG
  CCACTTTCCA TGCTGTGCTA TTTCATACAA TAAATGTATG AAGTCGCTGG GAACTTCACT
  AAGAAAGAAG TACTCTACGT TTCCTCCCGA AATACTTCCC AAAGACTATA TGGCACACAG
  AAGAACTGAA TCTGGCAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37708668	NES09222389	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27484646					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708668	NES09222389	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110253275 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	1583 bp upstream
Cpgi14588	CpG island 14588	1474 bp proximal
Rr597431	regulatory region 597431	1130 bp proximal
Rr597432	regulatory region 597432	1724 bp proximal
Tssr38370	transcription start site region 38370	1610 bp upstream
Tssr38371	transcription start site region 38371	1632 bp upstream
Tssr38372	transcription start site region 38372	1686 bp upstream