rs27484648 SNP Detail

Summary

• ID
  rs27484648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110253130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCTGCT TACTGCTTTC
  TGAATAGACA CTTAAATTCT CTTCACCTCA CCTTTATCTT TTATAAAATT TTATTAATAG
  CAATTTTATA GTATTGTTTT GCTAACAAAA TGAATTTGCT TGCATAAAAA TGTGAGTGTA
  GCATGACTAT TTCCCTCATT CCATACTACA TATAACTCAG TGGCTAAGCA CATGGAAGGT
  R
  TCATTTTAAT AAGTGTTTAC CGAGAGTGGG TGAATTCTAT GTGGAATGTT TATTTGAAAA
  GAGGCACCCT AACTATGCAG TGGGAGGTTG CTGTCTGGAT ATAGAAACCA CAGGAGGCCC
  CTAAAAAGAT AGACTACCAG GGACACTCTG AATGATACCA TGGGGAAACT CATTTCTAGG
  ACCCTCAGTG GGGTGCTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37708670	NES09222387	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		G
ss321256580	CHEV_4_110068538	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27484648					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708670	NES09222387	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110253130 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	1728 bp upstream
Cpgi14588	CpG island 14588	1619 bp proximal
Rr597431	regulatory region 597431	1275 bp proximal
Rr597432	regulatory region 597432	1869 bp proximal
Tssr38370	transcription start site region 38370	1755 bp upstream
Tssr38371	transcription start site region 38371	1777 bp upstream
Tssr38372	transcription start site region 38372	1831 bp upstream