rs27484650 SNP Detail

Summary

• ID
  rs27484650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110252937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACTTTCT CTAGCTCTTC
  CATTGGGGGC CCTGTGATCC ATCCAATAGC TGACTGTGAG CATCCACTTC TGTAACACTA
  GATTTCTATA TGTTAATATT TTCTTCCCAA CCAGTTTGTA AACTTAATGA CATGGTATTT
  TTGGTGTGAA AATGACATGA GGCAACATTT CTTAGCCTGG TACTGGTACT AAAGAAGCCT
  R
  CTTACTGCTT TCTGAATAGA CACTTAAATT CTCTTCACCT CACCTTTATC TTTTATAAAA
  TTTTATTAAT AGCAATTTTA TAGTATTGTT TTGCTAACAA AATGAATTTG CTTGCATAAA
  AATGTGAGTG TAGCATGACT ATTTCCCTCA TTCCATACTA CATATAACTC AGTGGCTAAG
  CACATGGAAG GTGTCATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37708672	NES09222385	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27484650					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708672	NES09222385	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110252937 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	1921 bp upstream
Cpgi14588	CpG island 14588	1812 bp proximal
Rr597431	regulatory region 597431	1468 bp proximal
Tssr38370	transcription start site region 38370	1948 bp upstream
Tssr38371	transcription start site region 38371	1970 bp upstream