rs27484856 SNP Detail

Summary

• ID
  rs27484856
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111830545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAGGAATT TAGGTCCTTC AAAAGAGAGA GTTTGTATTC
  AAATTTCATT GTTAAGATGG CTGATAAGGG TTAGTGTGCT CTGAATTTCA GAAATTACAC
  K
  ATTTCCATGG CCTGTTCTAT AAATTAAAGA ATCAGAGAGA AAAATAGTGA GGCCAATGTT
  TTAGACTTGA TGATACTCAT CCATAGAGGT GTTTCCAGTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37703577	NES09230819	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27484856					SNP	T	T	G	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37703577	NES09230819	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111830545 () rs orientation: forward

Symbol	Name	Function Class
Skint7	selection and upkeep of intraepithelial T cells 7	Intron
Tssr38394	transcription start site region 38394	494 bp downstream
Tssr38395	transcription start site region 38395	402 bp downstream
Tssr38396	transcription start site region 38396	276 bp downstream