rs27484858 SNP Detail

Summary

• ID
  rs27484858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111830197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAAATAAG CAAAGTAGAA AGCTCCCAGT TTTCTCAGTG
  TATTTGAGAA TAACAAGGGT GATAAATATC TCCCTGGAGG AAACTGGTTG AACCTGGAGA
  R
  ATCACCAACT CTGAGCTAGA GGAGGTGTAG GTGAATACTG ATAAAGGAGC TTTGCTGAAC
  TACCCACAGG CACAGAAGGA CCAGGAAAGA AATTCTTTCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37703579	NES09230817	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27484858					SNP	G	G	G	A	G	A	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37703579	NES09230817	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111830197 () rs orientation: forward

Symbol	Name	Function Class
Skint7	selection and upkeep of intraepithelial T cells 7	within coordinates
Tssr38394	transcription start site region 38394	146 bp downstream
Tssr38395	transcription start site region 38395	54 bp downstream
Tssr38396	transcription start site region 38396	32 bp upstream