rs27485049 SNP Detail

Summary

• ID
  rs27485049
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110011977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAAAGGC TTACTTCTAA
  CTAAAAATAC AATTATTATT ACTGGAGTAG AAAAAGTGGA CACAGTTTAG GAGTGAGAAC
  ATGCAAAACA GGAGAAAGAT CTTCCCAAGG TCTTATAATT GAGCTGCACC TGGAAAGATG
  TAGGTAGTAA CTAGGTCTAC TCTAGACAGC AGGAGTAGCA AGTGCCAAAC CCAAGAGGGG
  M
  TGGCACCTTA TTTGTTGGTG AAGAAAAGGA GGTTCAGGGT AGATAGCTTC CCAATGGAAG
  CCATCAACAC TCACTCTCAG CAAGGCTGGT CCCTCAAACT AAAGCTCAAG GATAGAGAAG
  AGCTCTGGGT GTCTCAGAGA ACAGGACTGC CGATGAACAT GGCCTCATGG CCTCATTGGT
  AGGGCTCTGT CTGAAGGGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37709468	NES09227277	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A		C	A	A	C		C
ss321255201	CHEV_4_109827385	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27485049					SNP	A	A	A	A	A	A	C	A	A	A	A	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709468	NES09227277	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110011977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	1995 bp distal
Gm33070	predicted gene, 33070	within coordinates
Rr91513	regulatory region 91513	224 bp proximal
Rr91514	regulatory region 91514	1024 bp proximal