rs27485051 SNP Detail

Summary

• ID
  rs27485051
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110011262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTTCAT CCTCTTTGAA
  AAGCAACAGA CCTGGTGCGA ATGGATGGGT CCCTAGCCAC TAGCAGCTGA GTGAGAGTTA
  TTTCTCACTT GCTCACAGCC TTGACACCCA TTATTTTATT TGCTGCTCCC TGAGTCTCTG
  ATGTGGGATT GAAGCCCTAT GTTTTCTCAG GCAAGGAAAG CTTGGAATGG AGTCACTTGT
  S
  CAAATCACAC TGTGTCAGAT CTTGGATCAT GTTCTGACCA GGGCCCTTGC TCTCTACCCA
  TTCTTTTCTT CAGAAGTAAG TTGGAAGGTC ACTGGAACTG TGGGAACAGA GAGTTACAGA
  TGTCAGAGTA TTCCCAGAAA GGTGGATTTG GAATACAGTG TAAGGACCCT GGGGGTGGTA
  GGGGTGGTAG GTGGGTGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37709470	NES09227312	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27485051					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709470	NES09227312	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110011262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	1280 bp distal
Gm33070	predicted gene, 33070	within coordinates
Rr84118	regulatory region 84118	1662 bp distal
Rr91513	regulatory region 91513	939 bp proximal
Rr91514	regulatory region 91514	1739 bp proximal
Tssr38368	transcription start site region 38368	1391 bp downstream