rs27485058 SNP Detail

Summary

• ID
  rs27485058
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110010466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAAAGC AGCTGATCTG
  AACACCACTA TTCTGATAGT ATGTCCCTCT GTTATTTCTG ACAGCTTTAG GGAGTTGAGA
  TGTGTCAGAT CTGGGGTTCC CAGTTCCAGG CTCAAATCCT AGAACTGCCA CTTGGTAATG
  CTTGGCAGGT GGCTTCAAAT TTCGTTCAGT TCAAGCTGTC CAGTATTAAC TGAGAACCTA
  M
  TATGAGCAGG GTGCTGAACT AGGGGCTAGG AGGCATACTA AAATACAATG TCTTTGAGGT
  CTCTTGATGT GGTGGAATAA ACAGGTGCCA ACACAGTGAA ACTCTTGGAT GCAAGGCACA
  GAGATATTGA CTAGGAGGAG ACAGCTACCA CTACTACTGC TGCTTTGATT TGAAAGGTAT
  TATTGGGACA GGTAAGGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37709477	NES09227305	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		C	A	A	C		A
ss321255195	CHEV_4_109825874	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27485058					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709477	NES09227305	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110010466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	484 bp distal
Gm33070	predicted gene, 33070	within coordinates
Rr84118	regulatory region 84118	866 bp distal
Rr91513	regulatory region 91513	1735 bp proximal
Tssr38368	transcription start site region 38368	595 bp downstream