rs27485059 SNP Detail

Summary

• ID
  rs27485059
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110010449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATGGATT CCTCCCTCTT
  AGAAAGCAGC TGATCTGAAC ACCACTATTC TGATAGTATG TCCCTCTGTT ATTTCTGACA
  GCTTTAGGGA GTTGAGATGT GTCAGATCTG GGGTTCCCAG TTCCAGGCTC AAATCCTAGA
  ACTGCCACTT GGTAATGCTT GGCAGGTGGC TTCAAATTTC GTTCAGTTCA AGCTGTCCAG
  K
  ATTAACTGAG AACCTAATAT GAGCAGGGTG CTGAACTAGG GGCTAGGAGG CATACTAAAA
  TACAATGTCT TTGAGGTCTC TTGATGTGGT GGAATAAACA GGTGCCAACA CAGTGAAACT
  CTTGGATGCA AGGCACAGAG ATATTGACTA GGAGGAGACA GCTACCACTA CTACTGCTGC
  TTTGATTTGA AAGGTATTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37709478	NES09227304	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		G	T	T	G		T
ss321255194	CHEV_4_109825857	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27485059					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709478	NES09227304	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110010449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	467 bp distal
Gm33070	predicted gene, 33070	within coordinates
Rr84118	regulatory region 84118	849 bp distal
Rr91513	regulatory region 91513	1752 bp proximal
Tssr38368	transcription start site region 38368	578 bp downstream