rs27485063 SNP Detail

Summary

• ID
  rs27485063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110010240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTGATA GATGTCTAGG
  GAAATGAACA GAAAGGGGGA GGGAGATGTT AGACAGCAGC CCATCCCCCC ACATCCACCC
  CAAACCAGAG GCCAGGCTCA TTATGGCTGA ATAGGGCAAA GGATAGAAAC AAGTTTGAAC
  AGCAATGTAA ACATATACAG ACAGAGGCCT CAGGATACCC TGAAAACCCC TCTGAAGCAG
  Y
  CTAGGTTCCC CATGGATTCC TCCCTCTTAG AAAGCAGCTG ATCTGAACAC CACTATTCTG
  ATAGTATGTC CCTCTGTTAT TTCTGACAGC TTTAGGGAGT TGAGATGTGT CAGATCTGGG
  GTTCCCAGTT CCAGGCTCAA ATCCTAGAAC TGCCACTTGG TAATGCTTGG CAGGTGGCTT
  CAAATTTCGT TCAGTTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37709482	NES09227300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss321255192	CHEV_4_109825648	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27485063					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709482	NES09227300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110010240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	258 bp distal
Gm33070	predicted gene, 33070	within coordinates
Rr84118	regulatory region 84118	640 bp distal
Rr91513	regulatory region 91513	1961 bp proximal
Tssr38368	transcription start site region 38368	369 bp downstream