rs27485065 SNP Detail

Summary

• ID
  rs27485065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110009849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGGAGA GCTTGGGTGC
  CACTTGGGCT GATGAGGCTG TGGTCCAAGG GTCTGCCCCT ATAGAATGAA GGTGACCCTG
  CTTCAGCACA GACAGCCTCT CTTTGAAGAT AGGCCAGGCT GCTTTGCATG CGGGATGAGG
  GCTCCTCTGG TCAATTTGCT TTCACTAATG TCAAGCCCCC GCGGCGCCGA CGTCGGTTGC
  R
  TAGCAACTGG CCGAGCAGCG CAGCAGAGGT GGCCATGCAT AAAAGATGAC ACATGATGGC
  GGGGCTCGGG GTGAGGATTT GCAAATTTAG ATACAGTCGC AGCAGGAATA TGAACTGGGC
  ACTCGACAAG CATGGGGGTG GGTGGTTTTC TTTGTCTCCT CCCATCTCAT TCAGAAAGCC
  AGCTTCCCAC TGTATTGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37709484	NES09227298	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss321255188	CHEV_4_109825257	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27485065					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709484	NES09227298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110009849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	within coordinates
Gm33070	predicted gene, 33070	17 bp upstream
Rr84118	regulatory region 84118	249 bp distal
Tssr38368	transcription start site region 38368	1 bp upstream