rs27485068 SNP Detail

Summary

• ID
  rs27485068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110009371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGAGGAAA GGGAAAACAG
  AGTAGATACC TCAGATTTCC TCTTCTCAGT CTAGCAGGCC TTTAGTCCTA AATGTGCAAG
  GCAGGGCCCT CCTTGGCCTA CTTTTTTCAT TCTTCACTGT TACTCCTCCC AGCCTTCCTC
  CCTTCCCATC TATCGCATTA CCCAGACTTT TATACTCCTC TGAGACAGCC CCTTGCTGTG
  R
  TTGGGACCAT CCTGAATGAT TTGCATGCCC AGCTCACAGT TGATCCATAG TGGAACTGGG
  CTGAGGGACC CTAGAGCTTT TCACAAAGTG GTTCTCAGGC CTTGTGCCAG GTTGAGCACA
  CTGTAAGTGC TCAATGCACA GTAGCTAGTT TCTTTTTCTG CCTGAAGGCA GAGCACACCC
  CACCCTGGGG GTTCTGAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37709487	NES09227295	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		A	G	G	A
ss321255183	CHEV_4_109824779	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27485068					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709487	NES09227295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110009371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	345 bp proximal
Gm33070	predicted gene, 33070	495 bp upstream
Rr84118	regulatory region 84118	30 bp proximal
Tssr38368	transcription start site region 38368	479 bp upstream