rs27485430 SNP Detail

Summary

• ID
  rs27485430
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111579470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAT ATAAACAGAT ATACTTTTTT
  W
  AATAGCAAAT AACACATTTA TTAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37704551	NES09217774	PERLEGEN	MM_PANEL2	f	SNP	T			T				T	A
ss45610275	mCV22885334	ABI	CRAMUS_MOUSE	f	SNP		T	T		A	T
ss147208603	ENSMUSSNP3153406	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321262771	CHEV_4_111394878	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27485430					SNP	T	T	T	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704551	NES09217774	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111579470 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14590	CpG island 14590	1863 bp distal
Gm33192	predicted gene, 33192	924 bp upstream
Rr597501	regulatory region 597501	987 bp distal
Rr597502	regulatory region 597502	476 bp distal
Spata6	spermatogenesis associated 6	within coordinates