rs27485431 SNP Detail

Summary

• ID
  rs27485431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111579434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCACAAA TATTTTAAAT
  ATCTTTTCAG TTGTAATTTT ATGTTTAAAT GTTTTATACA TTTGCATTAT ATAAAGGTCA
  AAACTGTAAT ATGAGAAGCT CTATGTTAAA CCAGTTTTTC ACACTTATTC ATAACTATAG
  GTAACTATTG CCATTGTTGG GCTATAAACA AATATATACA CACTTATTCG TGGCTCTAGG
  Y
  AATCATTGTC ATTATATAAA CAGATATACT TTTTTAAATA GCAAATAACA CATTTATTAG
  AGAATACAGA AGAGATAATG AATCCCTGAA AACGAATAGC ATTTAGTCAG TACTTGGGAC
  TTAACTCAGC TGGAAACTCA CAGGTCTCTT AGTCCCTTTC ACTTTAAAAC ACTGGCTCTC
  AACCTTCCTA ATACTGCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37704552	NES09217771	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27485431					SNP	T	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704552	NES09217771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111579434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14590	CpG island 14590	1827 bp distal
Gm33192	predicted gene, 33192	888 bp upstream
Rr597501	regulatory region 597501	951 bp distal
Rr597502	regulatory region 597502	440 bp distal
Spata6	spermatogenesis associated 6	within coordinates