rs27485433 SNP Detail

Summary

• ID
  rs27485433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111578834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT GTAACCAATG GATTAGCAGC
  Y
  TGACAGACTG CAGTTGCCTA GCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37704554	NES09217766	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	C
ss147208593	ENSMUSSNP1441077	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321262769	CHEV_4_111394242	CHEVERUD	SCREENING_POP	f	SNP								T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27485433					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704554	NES09217766	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111578834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14590	CpG island 14590	1227 bp distal
Gm33192	predicted gene, 33192	288 bp upstream
Rr597500	regulatory region 597500	1422 bp distal
Rr597501	regulatory region 597501	351 bp distal
Rr597502	regulatory region 597502	within coordinates
Spata6	spermatogenesis associated 6	within coordinates
Tssr38384	transcription start site region 38384	1590 bp downstream
Tssr38385	transcription start site region 38385	1564 bp downstream
Tssr38386	transcription start site region 38386	1542 bp downstream
Tssr38387	transcription start site region 38387	1455 bp downstream
Tssr38388	transcription start site region 38388	1436 bp downstream