rs27485434 SNP Detail

Summary

• ID
  rs27485434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111577907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTCATTGCA CCAAGTTTTC TTAGTTTCTC CTCTCAGAAT
  AAACCCAACT CCTCAGAAGC CACTTCAGCT CTTCCCTCCA GTACCCAAAC ACTCCAGACT
  Y
  TGCATCCTTC CAATCCTCCC AAGAAAGACC TGGTCAGCTT TTCGGACAAC TACTGCTTGG
  AGCTTGTAAC TCCACTCATC TACTCTCAAT TCAGGGGACT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37704555	NES09217764	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27485434					SNP	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704555	NES09217764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111577907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14590	CpG island 14590	300 bp distal
Gm33192	predicted gene, 33192	within coordinates
Rr597500	regulatory region 597500	495 bp distal
Rr597501	regulatory region 597501	within coordinates
Rr597502	regulatory region 597502	577 bp proximal
Spata6	spermatogenesis associated 6	within coordinates
Tssr38384	transcription start site region 38384	663 bp downstream
Tssr38385	transcription start site region 38385	637 bp downstream
Tssr38386	transcription start site region 38386	615 bp downstream
Tssr38387	transcription start site region 38387	528 bp downstream
Tssr38388	transcription start site region 38388	509 bp downstream