rs27485435 SNP Detail

Summary

• ID
  rs27485435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111577593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTGCGCG GATGCCGAAG
  GTGAAGGCGC TGCAATGCGC CCTGGCGCTG GAGATCCGCT CTGTGAGTAC CGGCCCTGTC
  CCGCCTCAGC CTCCAAGTCC GCTGCCCGCC CCCGGCCCTG GGGGACTCCT GGAAATCTCC
  AGTGCTTTCC CACTCCAGCC TCTCGGGGGC CTCACCCCAA CTTCCAGTTG GAGTGCTTTT
  R
  GATCTCTTCC TCACCACTTC GGAGTTCCGC TCCTGGGGCA GTAGTTCCTT TGAATTCTGC
  TTTACTCTTT TGGTGAGGAA CTCCTGAACC CTTGCTCCAG TCTGGGGTGT GTAGCATTTC
  CGCTTTCAGA TCCTTCCCCT AGCTTCCAGT TAAAGTAGGA ACGCCTTTTC AGTCATGGTG
  GAGTCCCTAA CTCCAAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37704556	NES09217762	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27485435					SNP	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704556	NES09217762	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111577593 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14590	CpG island 14590	within coordinates
Gm33192	predicted gene, 33192	within coordinates
Rr597500	regulatory region 597500	181 bp distal
Rr597501	regulatory region 597501	within coordinates
Rr597502	regulatory region 597502	891 bp proximal
Spata6	spermatogenesis associated 6	within coordinates
Tssr38384	transcription start site region 38384	349 bp downstream
Tssr38385	transcription start site region 38385	323 bp downstream
Tssr38386	transcription start site region 38386	301 bp downstream
Tssr38387	transcription start site region 38387	214 bp downstream
Tssr38388	transcription start site region 38388	195 bp downstream