rs27485436 SNP Detail

Summary

• ID
  rs27485436
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111577077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATG ATTTGCACTC ATAACTTTAC
  R
  TCACAGAAGA GCCGCTCAGC CCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37704557	NES09217760	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A		A	G		A
ss147208588	ENSMUSSNP3369034	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A
ss321262768	CHEV_4_111392485	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27485436					SNP	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704557	NES09217760	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111577077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14590	CpG island 14590	within coordinates
Gm33192	predicted gene, 33192	within coordinates
Rr597500	regulatory region 597500	within coordinates
Rr597501	regulatory region 597501	336 bp proximal
Rr597502	regulatory region 597502	1407 bp proximal
Spata6	spermatogenesis associated 6	74 bp upstream
Tssr38384	transcription start site region 38384	95 bp upstream
Tssr38385	transcription start site region 38385	173 bp upstream
Tssr38386	transcription start site region 38386	204 bp upstream
Tssr38387	transcription start site region 38387	293 bp upstream
Tssr38388	transcription start site region 38388	307 bp upstream