rs27485440 SNP Detail

Summary

• ID
  rs27485440
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111575736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCCAGA CAAAATGATT
  ATCCGAACAC ATAAAATTAA AAGGAAAACA AAGAGAGAAA CAATCGAATC AAAATGGTTA
  TTGTAGCTAT GAGGCTGTTT CCAGAGAGTG GATTGCTAAT GAAACCCTGC AAAGGCACTC
  AAGCTCAGCA GTAGTCAGAG ATGCAAGACT AAAGCATGAC GATGAACAGA AATACAGAGA
  M
  TAAAAGTGCA AACATCCATG GTGCAAAAAG TGGAAAAAAA AGCAGTCATA TTTTTCTTGA
  TGAAGCAGGA ATTGGTGCAG CTTTGGAAGA TGTTGCGTAT TACTCTAAAG ACCCCACATG
  TGCAAAGCCT GCACAGGCTT TCCAACTCAA TACATACACA TATATTAACA GACATATTCT
  AAAGGTTTAA AAATTATTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss37704561	NES09217803	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs27485440					SNP	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704561	NES09217803	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111575736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14590	CpG island 14590	1305 bp proximal
Gm33192	predicted gene, 33192	within coordinates
Rr597500	regulatory region 597500	955 bp proximal
Rr597501	regulatory region 597501	1677 bp proximal
Spata6	spermatogenesis associated 6	1415 bp upstream
Tssr38384	transcription start site region 38384	1436 bp upstream
Tssr38385	transcription start site region 38385	1514 bp upstream
Tssr38386	transcription start site region 38386	1545 bp upstream
Tssr38387	transcription start site region 38387	1634 bp upstream
Tssr38388	transcription start site region 38388	1648 bp upstream