rs27485441 SNP Detail

Summary

• ID
  rs27485441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111575600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG AAAACAAAGA GAGAAACAAT
  Y
  GAATCAAAAT GGTTATTGTA GCTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37704562	NES09217802	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T			T		T	C
ss45589946	mCV24178467	ABI	CRAMUS_MOUSE	f	SNP		T	T				C	T
ss147208583	ENSMUSSNP534698	ENSEMBL	ENSEMBL_Sanger	f	SNP			T					T
ss321262767	CHEV_4_111391008	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27485441					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704562	NES09217802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111575600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14590	CpG island 14590	1441 bp proximal
Gm33192	predicted gene, 33192	within coordinates
Spata6	spermatogenesis associated 6	1551 bp upstream
Tssr38384	transcription start site region 38384	1572 bp upstream
Tssr38385	transcription start site region 38385	1650 bp upstream
Tssr38386	transcription start site region 38386	1681 bp upstream
Tssr38387	transcription start site region 38387	1770 bp upstream
Tssr38388	transcription start site region 38388	1784 bp upstream